Notes on Particle Tracking Setup

General principles

Particle tracking microrheology may mean two different methods. One is single particle tracking technique, where the particle acts as a probe to investigate the rheology of the matrix. Another is general particle tracking microrheology where the ensemble of many particles itself is investigated. The particle tracking methods considered here involve the use of optical microscope. DWS which involve laser light scattering is not considered here. In DWS the MSD is not directly tracked but calculated from g2(t)-1.

The detailed principles of optical and video microscopy were reviewed. Thierry Savin’s PhD dissertation (MIT, 2006) is a good source of information.

Microscope

An inverted microscope with fluorescent, live cell, time-lapse imaging, high-speed multi-fluorescence optical sectioning, polarization contrast and DIC, micromanipulation, etc. is favorable. Oil immersion objectives are required to correctly resolve Brownian colloidal particles.

60X oil immersion type objective lens (Olympus, Japan) with numerical aperture of 1.40, while 500 nm probe particles were observed using 100X oil immersion type objective lens with numerical aperture of 1.421.

CCD/CMOS

Cooling reduces the array’s dark current, improving the sensitivity of the CCD to low light intensities, even for ultraviolet and visible wavelengths. Professional observatories often cool their detectors with liquid nitrogen to reduce the dark current, and therefore the thermal noise, to negligible levels2. Magnification is characterized by nm per pixel. Generaly hundreds of nm per pixel can achieved, which yields spatial resolutions of tens of nm, well below the optical resolution of ~250 nm.

Cells/Chambers

Software

How to know which in the current frame is the particle in the last frame?

Calculation of: MSD, PDF

Routines here3.